Reference

Use this section when you know what you need and want a precise answer.

Analysis matrix

Model types, endpoints, methods, outputs, maturity, and explicit execution boundaries in one table.

Analysis matrix
All 56 capabilities

Every registry entry with maturity, implementation state, reproducibility, evidence artifacts, limitations, and open gates.

Capability catalog
Command-line interface

Every command, argument, family name, file contract, and exit code.

Command-line interface
Warnings and errors

Stable code families, structured records, exceptions, and automation guidance.

Warning and error catalog
Formula and data

Input adapters, missingness contracts, grammar, transformations, factors, and rank checks.

Data and formulas
Interoperability

Compatibility reports and conservative import/export boundaries for R, NONMEM, PharmML, SBML, and SED-ML.

Interoperability
Glossary

Definitions for statistical, numerical, pharmacometric, and provenance terms used throughout PyMixEF.

Glossary
Aliases

Searchable mapping for Normal, NB2, dry_run, model_diff, PK aliases, backend aliases, and pymixef.load.

API alias reference
Complete API

Task-oriented public symbol map plus one generated reference page per public module.

API reference